EECS 730: Introduction to Bioinformatics

Schedule and Lecture Notes
http://people.eecs.ku.edu/~jhuan/EECS730






Gree cells denote no class                                                                                     
Class schedule is tentative and is subject to change according to class progress
Slides that appear before class meeting might have errors and the errors will be fixed after class meeting

Week Date Topic Slides Assigned
Due
1 Aug 20
Introduction to bioinformatics
Slides
background survey
1 Aug 22
Cell Theory
Slides


1 Aug 24
Statistics I
Slides


2 Aug 27 Statistics II Slides

2 Aug 29 Sequence Alignment
Slides

3 Sept 6
Sequence Alignment II
Slides

4 Sept 13
BLAST
SlidesI
SlidesII
HW1
5 Sept 20
MM
Slides


6 Sept 27
HMM
Slides
HW2
7
Oct 4
Guest lecture: John Karanicolas
Slides

8
Oct 10
Site visit: KU Genomics Core

Smissman Research Laboratories, room 156 11:00-12:15

8
Oct 11
Midterm I



9
Oct 18
Site visit: KU Specialized Chemistry Center
Location: Structure Biology Center 1051
3:45- 5:15

10
Oct 25
Chemistry of life
Slides

11
Nov 1
Geometric Hashing
Slides


12
Nov 8
Genome and Genetics
Slides


13
Nov 15
Microarray
Slides
Slides


14
Nov 19
PPI
Slides
Slides