| Week |
Date |
Topic |
Handout |
Slides |
Assigned
|
Due
|
| 1 |
Aug
24
|
Introduction
to bioinformatics
|
PPT
|
Slides
|
Background
Survey
|
|
1
|
Aug
26
|
Introduction
to molecular biology
|
PPT
|
Slides
|
|
|
2
|
Aug
31
|
Introduction
to statistics
|
PPT
|
Slides
|
|
Background
Survey |
2
|
Sept
2
|
Introduction
to statistics II
|
PPT
|
Slides
|
|
|
| 3 |
Sept
7
|
Labor
Day
|
|
|
|
|
| 3 |
Sept
9
|
Pair-wise
Sequence Alignment I |
PPT
|
Slides
|
|
|
| 4 |
Sept
14
|
Pair-wise
Sequence Alignment II |
PPT
|
Slides
|
|
|
| 4 |
Sept
16
|
Pair-wise
Sequence Alignment II |
|
|
|
|
| 5 |
Sept
21
|
Pair-wise
Sequence Alignment II |
|
|
|
|
5
|
Sept
23
|
Pair-wise
Sequence Alignment III |
PPT
|
Slides |
|
|
| 6 |
Sept
28
|
Lab I:
BLAST (in Eaton 1005C)
|
PPT |
Slides
|
Homework
1
Lab handout
|
|
| 6 |
Sept
30
|
HMM
|
PPT |
Slides |
|
|
7
|
Oct
5
|
HMM II
|
PPT |
Slides |
|
Homework
1
|
7
|
Oct 7
|
Multiple
Sequence Alignment
|
|
|
|
|
| 8 |
Oct
12
|
Midterm
I
|
|
|
|
|
| 8 |
Oct
14
|
Chemistry
of Life
|
PPT
|
Slides
|
|
|
9
|
Oct
19
|
Lab
II: HMM
|
|
|
Homework 2
Lab handout |
|
9
|
Oct
21
|
Protein
Structure
|
|
|
|
|
10
|
Oct
26
|
Protein
Structure Alignment
|
PPT |
Slides |
|
|
10
|
Oct
28
|
Microarray
Genome & Gene
|
PPT
PPT
|
Slides
Slides
|
|
Homework
2 |
11
|
Nov
2
|
Guest
Lecture: Microarray
|
|
|
|
|
11
|
Nov
4
|
Midterm
II
|
|
|
|
|
12
|
Nov 9
|
Guest
Lecture: Pharmacoinformatics |
|
|
|
|
12
|
Nov
11
|
Guest
Lecture: Systems Biology
|
|
|
|
|
13
|
Nov
18
|
Microarray
Data Analysis
|
PPT |
Slides |
|
|
13
|
Nov
20
|
Microarray
Data Analysis II |
PPT |
Slides |
|
|
14
|
Nov
23
|
Functional
Genomics
|
PPT |
Slides |
|
|
14
|
Nov
25
|
Thanksgiving
Holiday
|
|
|
|
|
15
|
Nov
30
|
Proteomics
I
|
|
|
|
|
15
|
Dec
2
|
Guest
Lecture: Bioengineering
|
|
|
|
|